haplotype-assembly

Here are 4 public repositories matching this topic...

wangyibin / CPhasing

C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.

genome assembly hi-c scaffolding hic genome-assembly phasing polyploid haplotype-assembly diploid genome-assembler haplotype-resolved-assembly hific pore-c ultra-long hifi-c

Updated Mar 29, 2025
Python

baozg / Potato_C88

Star

Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning

haplotype-assembly

Updated Aug 14, 2024
Python

PlantandFoodResearch / MCHap

Star

Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.

numpy array haplotypes bayesian-inference dna-sequences genotyping polyploidy haplotype-assembly haplotype-blocks polyploid-genotyping

Updated Sep 18, 2024
Python

HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.

hiv viral-genomics haplotype-assembly nanopore-analysis-pipeline genomic-surveillance

Updated Aug 30, 2024
Python

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haplotype-assembly

Here are 4 public repositories matching this topic...

wangyibin / CPhasing

baozg / Potato_C88

PlantandFoodResearch / MCHap

STTLab / HIV-64148

Improve this page

Add this topic to your repo