A pipeline to impute plink genotypes to 1000 Genomes phase 1
-
Updated
Feb 27, 2018 - Shell
A pipeline to impute plink genotypes to 1000 Genomes phase 1
Perl software to cluster SNPs based on its genotype.
Estimating temporally variable selection intensity from ancient DNA data with a combination of forward- and backward-in-time simulations
Estimating temporally variable selection intensity from ancient DNA data
Estimating temporally variable selection intensity from ancient DNA data with the flexibility of modelling linkage and epistasis
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.
Genotype likelihood simulator for VCF/BCF files
Estimation of pairwise distances under a probabilistic framework
Estimation of per-individual inbreeding tracts under a probabilistic framework
Utilities for analyzing next generation sequencing data.
SNP genotyping in polyploids
A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
Genotyping of segregating mobile elements insertions
Estimation of per-individual inbreeding coefficients under a probabilistic framework
Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
stackr: an R package to run stacks software pipeline
command-line tools for the management of genotype likelihoods and allele counts
Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
RADseq Data Exploration, Manipulation and Visualization using R
Add a description, image, and links to the genotype-likelihoods topic page so that developers can more easily learn about it.
To associate your repository with the genotype-likelihoods topic, visit your repo's landing page and select "manage topics."