Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

MyGene.info: A BioThings API for gene annotations

API for linked biological knowledge

Generic human DNA variant annotation pipeline

A python package and a set of shell commands to handle GTF files

Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.

Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:

This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).

Feature extraction algorithm for genomic data

A MatchMaker Exchange server

Earn royalties and provide value to your users by allowing your users to store their genetic data at Sequencing.com.

Correlation Graph Convolutional Networks on Gene Expression and other Biology data

Repository contains information on Gene Updater

DRIP Optimized Peak Annotator

Tool for converting between various gene ids

A knowledge aggregator for computational biology

Docker for Gnormplus Gene Normalisation

Download biological databas, extract database identifier and entrez gene identifier, insert in a mongo database

Genes variants annotation tools using online services. Also does basic manipulations of HPO.

Snakemake pipeline for detecting, annotating, filtering and visualising structure variations and gene fusions from WGS/WES.