Official AFNI source and documentation

This repository contains the files that generate Andy's Brain Book on ReadTheDocs.

fMRI Imaging Analysis

Python code explaining how to display structural and functional fMRI data.

Standalone MATLAB implementation of permutation TFCE correction

Multi-voxel pattern analyses methods based on ML & DL to decode the category of visual stimuli viewed by a human subject based on their recorded brain activity in fMRI form

Resting state HRF estimation from BOLD-fMRI signal

ASD diagnosis on ABIDE I

MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness

A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI

Generating and validating natural-language explanations.

Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis

A Python software package for BWAS

These C/C++ source files consist of 150 classes, 300,000 lines of code, excluding a Qt-based user interface. Its functionality includes: GLM-statistics, hierarchical clustering, (non)-linear optimization, L1 and L2 norm minimization, Hungarian algorithm, EEG/MEG forward and inverse modelling, Boundary Element Method, spatio/temporal covariance m…

[KHBM] Winter School 2022 - Neuroimage Data Analysis using Python and Graph Neural Networks

Causal Dynamic Network Modeling

The NEXT fMRI analyisis workflow of xIA

Improving autism identification with multisite data via site-dependence minimisation and second-order functional connectivity (TMI, 2022)

Code related to the fMRI experiment on the contextual modulation of the McGurk Effect