Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

Scripts, utilities and programs for genomic bioinformatics.

Fast k-mer based tool for multi locus sequence typing (MLST)

Software for the analysis and visualization of site-saturation mutagenesis experiments

Scripts and utilities for automatic processing & management of Illumina NGS sequencing data within the Bioinformatics Core Facility at the University of Manchester

LAVA: Longitudinal Analysis of Viral Alleles

The DKFZ alignment workflow plugin originally developed at the eilslabs

OMD Curation Toolkit is a python package designed for the download and curation of metadata and fastq files of public omics datasets.

Web app for CRISPR experiment setup and analysis

Collecting Genotypes from ENA and make their SNPs

A python script to convert FASTQ to FASTA

Auto-q Qiime Analysis Automating Script

Package to merge multiple pair of pair-end fastq data

This repository provides simple bioinformatics tools for reading FASTQ and FASTA files, building k-mer overlap graphs for genome assembly, and performing pattern matching using edit distance for sequence alignment tasks

downsample fasta/fastq files to given number of base pairs

Data Analysis for Genomics, FASTQ File Structure and Analysis using Python.

Tools to analyze fasta or fastaq files with python.

Provides graphical and .json output for paired-end Next-Generation Sequencing (NGS) data as well as genome coverage data from .bed files. Requires Python 3.9.1 or higher.

Fast demultiplexing of Illumina FASTQ files using Python.