GET_HOMOLOGUES: a versatile software package for pan-genome analysis

MView extracts and reformats the results of a sequence database search or multiple alignment.

Tools for querying and analysis of genomic data

Evolutionary Bioinformatics Toolkit (EBT)

Perl script to convert GenBank records to FASTA format

Automated parser for VaxiJen output 🚀 A lightweight Perl tool to extract and tabulate antigenicity predictions from VaxiJen . Designed for bioinformatics, immunoinformatics, and reverse vaccinology workflows, this script helps researchers process large datasets into clean, ready-to-analyze tables.

Gene Families and genetic maps Analyses Tools

Perl implementation of Markov Chain for the course BIO331

perl script that reads file in multifasta format and complements it

fasta-extractor.pl extracts ORFs from a genomic fasta file based on coordinates in an ID list, generating corresponding sequences from two input files: genomic_fasta-file and id_list-file.

ECS 124 - Theory and Practice of Bioinformatics

A Snakemake pipeline for matching sequencing reads to a reference genome and annotating genomic features.

Iterative Cluster Expansion BLAST. Captures very divergent homologous sequences via gradual search space expansion.

Scripts and pipelines by Merce Montoliu-Nerin

Runs MrBayes on multiple loci in parallel

A collection of code snippets and scripts related to my bioinformatics works

Filter out sequences in FASTQ files that match a reference genome

Various components for building RNA sequencing applications in Perl