Split multi fasta file into single fasta files
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Feb 24, 2020 - Python
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fasta-sequences
Here are 30 public repositories matching this topic...
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
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Mar 28, 2022 - Python
Sequence clustering and database creation using mmseqs, from local fasta files
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Dec 7, 2021 - Python
Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
markov-chain motif dna fasta mass-spectrometry k-mer genome-analysis peptides de-bruijn-graphs fasta-sequences orf protein-sequence z-score directed-acyclic-graph overlap-graph cyclic-peptides cyclic-pattern
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Jan 28, 2021 - Python
A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only.
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Aug 13, 2022 - Python
Removes duplicate sequences in multifasta file
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May 27, 2022 - Python
omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use refer…
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May 7, 2021 - Python
Performs semi-global alignments on FASTA sequences. Homework 3 for Dr. Miller's Intro to Bioinformatics class.
python html bioinformatics alignment fasta dynamic-programming sequence-alignment semi-global-alignments fasta-sequences
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Nov 7, 2014 - Python
omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.
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Jul 30, 2024 - Python
Creating plots using FASTA amino-acid files
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Mar 15, 2020 - Python
Analysis of FASTA ,Protein,DNA sequence.
data-science bioinformatics web-application protein-sequences fasta dna-sequences fasta-sequences biotechnology sequence-analysis dna-sequence-analysis nucleotide-sequence streamlit fasta-sequence
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Apr 12, 2024 - Python
Terminal App to find ORF
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Aug 31, 2021 - Python
This script allows us to generate ORF for a given Protein Sequence.
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May 2, 2017 - Python
Warning: this tool is in early development stage, use with care.
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Jul 20, 2021 - Python
Miscellaneous Scripts in Bioinformatics
sqlite clinical-trials database-schema clinical-trial-management-system peptide-identification dna-sequences fasta-sequences database-design clinical-data-warehouse peptide-sequences mass-spectrometry-data gz-compression md5-python mgf dna-processing mfg-test sql-cte clinical-trials-retrieval sequence-spectrum
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Oct 17, 2024 - Python
Sequence GC ratios and skew calculations
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Nov 14, 2020 - Python
CULSPIN- Computing ULam SPiral INdices tool
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Mar 18, 2023 - Python
Alignement structurale d'une séquence protéique sur une structure protéique 3D.
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Feb 27, 2019 - Python
Tools to analyze fasta or fastaq files with python.
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Nov 24, 2022 - Python
Simple program which converts nucleotide sequence to amino acid sequences and does some length frequency analysis
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Jan 5, 2023 - Python
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