Idris (Idris2) port of the Haskell biocore library.

Python Scripts for Haim Lab (Microbiology Research) Projects

A simple C library to extract the amino acid sequence from a file in PDB (Protein data bank) format and output to a FASTA format file.

Small package used to parse a file in the Fasta format

Java implementation of global alignment using a variation of Levenshteindistance. It takes first two sequences from fasta file and returns aligned sequences also in fasta format.

simple and convenient program to convert fasta sequences to fastq sequences

Parse CSV files containing fasta components to a true fasta file.

Fasta_splitter

fakit: a simple program for fasta file manipulation

Hadoop Sequence Parser (HSP) library

FLiCK - Format LeveragIng Compression frameworK

Convert EMBL files to FASTA

Idris (Idris2) port of the Haskell biofasta library.

Index FASTA file

Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/, original code from @marta- , with some work done by @yoann-dufresne)

A mode for fasta files

fdemux is a FASTA/FASTQ demultiplexer with support for (arbitrarily) fuzzy barcode matching, asymmetric barcoding, and parallel processing.

Small and fast FASTA sequences length fetcher

A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.