🧬 gget enables efficient querying of genomic reference databases
Gene Set Enrichment Analysis in Python
Python package to perform enrichment analysis from omics data.
A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
A Python package for gene network analysis
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
Library for KEGG pathway enrichment analysis
HARE: Genetic Feature Enrichment Analysis Pipeline
Overrepresentation analysis for KEGG and PID pathways using community detection
Published in GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases
A Python library and command-line tool for creating dot-plots for pathways and enrichment analysis.
Generic enrichment analysis
LORA: Lipid Over-Representation Analysis
Bayesian tests for set enrichment 🍞
This project features a pipeline for Gene Ontology (GO) enrichment analysis on candidate genes with functional transcriptome annotations. It identifies enriched Biological Processes (BP), Cellular Components (CC), and Molecular Functions (MF), using R and Python to create 2D treemaps and interactive 3D visualizations of GO terms.
A Web-Based Gene-Enrichment and Functional Annotation Tool
DBRetina python package
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