SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.o…
fpga
gpu
smith-waterman
needleman-wunsch
sequence-alignment
long-reads
minimap2
short-reads
hardware-accelerator
sequence-aligner
edlib
pre-alignment-filtering
wavefront-alignment
-
Updated
Mar 31, 2023 - VHDL