Package for the data-driven representation of non-linear dynamics over manifolds based on a statistical distribution of local phase portrait features. Includes specific example on dynamical systems, synthetic- and real neural datasets.

Nengo library of additional extensions

Whole-cell modeling tutorials

Official implementation of Enhanced Gaussian Process Dynamical Modeling for Battery Health Status Forecasting.

Framework for systematically and scalably designing whole-cell models from large datasets

Code associated with the Karr Lab's 2018 whole-cell modeling review in Current Opinion in Biotechnology

COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Detailed paper describing python program to calculate fixed points of various functions and calculate the order of the orbits for a given seed.

Using Python with matplotlib to calculate and visualize/analyze randomly seeded orbits of 3 different functions.

PyPi package of Reward-Modulated Self Organizing Recurrent Neural Network

GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Computational model for the report: Work scenarios in the ecosocial transition - 2020-2030.

Generate DAEs of k-pendulums.

Dynamics of Newton's Method for a Nonanalytical Perturbation on a Complex Quadratic Function