Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

Digital pathology image viewer with support for human/machine generated annotations and markups.

QuPath - Open-source bioimage analysis for research

A framework for high-performance medical image processing, neural network inference and visualization

Tools for computational pathology

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

cuCIM - RAPIDS GPU-accelerated image processing library

Library for Digital Pathology Image Processing

Towards a general-purpose foundation model for computational pathology - Nature Medicine

Interoperable web-based slide microscopy viewer and annotation tool

Full package for applying deep learning to virtual slides.

Cytomine-Core is the main web server implementing the Cytomine API

A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.

⚡ Open-source software for deep learning-based digital pathology

Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.

A vision-language foundation model for computational pathology - Nature Medicine

Stain normalization tools for histological analysis and computational pathology

Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings of The 3rd International Conference on Medical Imaging with Deep Learning (MIDL) 2020'

🔬 Code-free deep segmentation for computational pathology