Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
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Updated
Aug 24, 2022 - HTML
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
Amplicon sequence processing workflow using QIIME 2 and Snakemake
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
Dadaist2 🟨 Highway to R
Analysis of 16S rRNA (dada2 amplicon sequence variants) from human volunteers given various vaccines following two different antibiotics treatments compared to no antibiotics.
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.
Processing NEON soil microbe marker gene sequence data into ASV tables.
A pipeline to analyse marine fish amplicon data
🌊 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM
A workflow for processing CCS reads of AMF to ASVs using DADA2
En este repositorio se encuentran todos los scripts utilizados para mi tesis de licenciatura, titulada: "Análisis de perfiles funcionales de la microbiota intestinal de pacientes con trastorno depresivo mayor", la cual utiliza un lenguaje de programación en R y Phyton.
Docker convenience image containing R and the DADA2 package (plus dependencies), used for processing amplicon data.
Workflow stages and data for Morando, Magasin et al. 2024
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