Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
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Aug 24, 2022 - HTML
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dada2
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Dadaist2 🟨 Highway to R
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Mar 7, 2025 - HTML
Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
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May 25, 2022 - HTML
neonMicrobe: Processing NEON soil microbe marker gene sequence data into ASV tables, duplicated from https://github.com/claraqin/neonMicrobe
bioinformatics neon r-package marker-genes macroecology biogeography dada2 soil-microbiome neonmicrobe
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Jan 15, 2023 - HTML
Analysis of 16S rRNA (dada2 amplicon sequence variants) from human volunteers given various vaccines following two different antibiotics treatments compared to no antibiotics.
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Jun 30, 2021 - HTML
This repository provides a cloud-based learning module for microbial analysis of 16S rRNA sequencing data. It covers principles, data preprocessing, taxonomic classification, and diversity analysis using R and AWS SageMaker.
ggplot2 bioinformatics docker-container computational-biology microbiome high-throughput-sequencing r-programming genomic-data-analysis phyloseq taxonomic-classification dada2 aws-sagemaker sequence-processing 16srna
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Jun 6, 2025 - HTML
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