Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.

A curated list of awesome computational cryo-EM methods.

register 3D point clouds using rotation, translation, and scale transformations.

Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy.

Overcoming the preferred orientation problem in cryoEM with self-supervised deep-learning

TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.

The Swiss Army knife for carbohydrate structure validation, refinement and analysis

example set up for Relion on AWS ParallelCluster for CryoEM

A Docker-based distribution of Appion-Protomo.

.MRC and .EM thumbnailer for GNOME

KLT picker: Particle picking using data-driven optimal templates (Python version)

volumetric image toolkit for simple feature detection in 3D images (segment tomograms)

A Framework for Orientation Recovery with Uncertainty Measurement in Cryo-EM Image Analysis

a GUI for the analysis of cryo-EM screening data

helper scripts for Electron microscopy data processing

Python3 tools for simulating cryoEM particle data.

A simple script to run CryoSparc cluster on the fly inside a SLURM HPC job

Pipeline and GUI for cryoEM model refinement using Rosetta and Phenix

Scipion plugin for ModelAngelo: an automatic atomic model building program for cryo-EM maps. With or without providing a sequence.