Simulate the C. Elegans worm brain in your browser and interact with the worm as it moves around
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Jun 7, 2026 - JavaScript
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connectome
Here are 229 public repositories matching this topic...
A curated list of fruit fly connectome projects: MaleCNS, FlyWire, brain simulations, embodied models, games, and research tools.
awesome reinforcement-learning neuroscience computational-neuroscience neural-networks awesome-list drosophila connectomics fly connectome mujoco drosophila-melanogaster flywire embodied-ai fly-brain fruit-fly brain-simulation neuromechfly malecns flybody
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Sep 14, 2026
Graph theory analysis of brain MRI data
r statistics neuroscience mri graph-theory neuroimaging complex-networks fmri network-analysis connectomics brain-imaging connectome brain-connectivity tractography
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Feb 20, 2024 - R
Experimental Drosophila-inspired camera-to-robot bridge. Working mock neural backend, optical flow, IMU feedback and UDP motor control. MaleCNS integration planned.
computer-vision robotics esp32 neuroscience drosophila connectome brain-simulation biomimetic-robotics
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Sep 16, 2026 - Python
Python library for analysis of neuroanatomical data.
visualization python blender neuroscience transform segmentation neurons swc volumes skeletons anatomy meshes 3d connectome neuroanatomy nblast flywire neuprint hemibrain morphometric
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Sep 6, 2026 - Python
micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
awesome mri neuroimaging imageprocessing bids microstructure diffusion-mri connectome resting-state multimodal
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Aug 10, 2026 - Shell
A dynamic connectome mapping module in python.
python clustering dynamic graphs neuroscience meg eeg connectivity neuroimaging fmri graph-analysis connectome functional-connectivity time-varying fc-states graph-distances
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Jul 24, 2023 - Python
STAGIN: Spatio-Temporal Attention Graph Isomorphism Network
attention neuroimaging fmri connectome explainability neurips gnn graph-neural-network stagin neurips2021
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Jul 16, 2023 - Python
A performant, powerful query framework to search for network motifs
python neo4j graph networkx graph-database connectomics query-language connectome motif-discovery graph-matching motifs subgraph-isomorphism bossdb vf2 aplbrain dotmotif
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Jul 27, 2026 - Python
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
python docker pipelines singularity eeg fmri bids brain connectome parcellation dmri bidsapp bids-apps chuv
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Mar 20, 2026 - HTML
A fruit fly connectome as a drone pilot. Camera -> fly eyes -> spiking brain -> descending neurons -> drone. Live 3D demo in your browser.
python drone robotics neuroscience computational-neuroscience drosophila ardupilot connectome crazyflie betaflight tello spiking-neural-network fruit-fly brain-simulation malecns
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Sep 16, 2026 - Python
Embodied Drosophila: 138,639-neuron whole-brain connectome simulation (FlyWire v783) in a biomechanical body (NeuroMechFly v2 / MuJoCo). Vision, olfaction, gustation, flight, and emergent behaviors — all from the real connectome.
robotics gpu neuroscience pytorch computational-neuroscience biomechanics drosophila connectome mujoco lif-neurons spiking-neural-network flywire embodied-ai brain-simulation neuromechfly
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Mar 21, 2026 - Python
Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
image-processing chunk image-segmentation connectome volumetric-data 3d-images convnet-inference composable-operators
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Jun 20, 2025 - Python
Real fly anatomy and model-output starter. Custom license requires web UI and repository attribution.
react template threejs typescript neuroscience scientific-visualization drosophila connectome vite source-available malecns flybody
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Sep 12, 2026 - TypeScript
A unified framework for skeletonization, morphological analysis, and connectivity analysis.
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Aug 23, 2024 - Julia
Emergent behaviour and neural dynamics in artificial agents tracking odour plumes
deep-reinforcement-learning neuroscience recurrent-neural-networks computational-neuroscience artificial-life dynamical-systems drosophila connectome animal-behavior animal-behaviour neuroscience-inspired-ai neuroai
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Jun 13, 2025 - Jupyter Notebook
Please use the new version of LiFE: www.github.com/brain-life/encode
statistics neuroscience mri neuroimaging brain diffusion-network diffusion-mri connectome neuroanatomy
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Sep 29, 2017 - MATLAB
A prediction-based extension of network-based statistics.
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May 26, 2026 - MATLAB
A Hugo theme with backlinks for online communities
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Oct 31, 2023 - CSS
Tools to work with the FlyWire connectome. Fully interoperable with navis.
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Jul 9, 2026 - Python
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