Docker image for a full ME model stack.
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Updated
Jun 8, 2017 - Jupyter Notebook
Docker image for a full ME model stack.
iPfal17 genome-scale metabolic reconstruction; lipid metabolism curation
Repository of code and information developed for computational biology research at UGA
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
Data and tools necessary to construct iJL1678b-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression
Utility to simplify obtaining information from genome-scale models as well as their manipulation. This implementation is available only for working with COBRApy.
FBAhv: FBA analysis of host-virus metabolic model (read related publication at: https://www.life-science-alliance.org/content/4/1/e202000869)
A Python framework for structural systems biology
Proyecto para las redes metabolicas humanas.
Shiny app for visualization of the toy GENREs
findCP core package - find ChokePoint reactions in genome-scale metabolic models
findCP CLI package - find ChokePoint reactions in genome-scale metabolic models
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
A class based on COBRApy to handle quantitative mutations on metabolic models.
Python package and workflow for EFM calculation via (mp)lrs and efmtool
Reaction Inclusion by Parsimony and Transcript Distribution
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