Differentiable molecular simulation of proteins with a coarse-grained potential
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Updated
Feb 21, 2022 - Python
Differentiable molecular simulation of proteins with a coarse-grained potential
Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-Tuning Particle Swarm Optimization
Massively parallel hybrid particle-field molecular dynamics in Python.
COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3
A toolkit for working with coarse-grain systems
Force field parameters and supplementary scripts for the "A coarse-grained model for DNA origami" paper by R. Reshetnikov, A. Stolyarova, A. Zalevsky et. al.
Analyze two-component nanoparticle properties for classical molecular dynamics simulations
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