a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
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Nov 25, 2025 - Python
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cell-segmentation
Here are 59 public repositories matching this topic...
StarDist - Object Detection with Star-convex Shapes
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May 30, 2025 - Python
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
python machine-learning deep-learning image-analysis cell-segmentation digital-pathology whole-slide-imaging medical-image-analysis computational-pathology cell-classification histopathology stain-normalization tissue-segmentation tissue-analysis
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Nov 25, 2025 - Python
Spatiotemporal modeling of spatial transcriptomics
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Oct 14, 2025 - Python
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
deep-learning pytorch stitching segmentation datasets image-segmentation multiplex super-resolution immunohistochemical-images cell-segmentation digital-pathology pathology whole-slide-imaging cell-biology cloud-native-applications multitask-learning pathology-image pathology-gan immunohistochemistry ai-ready
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Oct 30, 2025 - Python
Cell tracking and segmentation software
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Nov 21, 2025 - Python
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
pytorch biomedical multi-resolution cell-segmentation instance-segmentation cell-biology pytorch-implementation multi-modality pytorch-segmentation monai vision-transformer neurips-2022 miscroscopy
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Apr 1, 2024 - Python
Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
deep-learning pytorch object-detection unet semantic-segmentation cell-segmentation cpn instance-segmentation mask-rcnn cell-detection fpn cell-counting celldetection
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Apr 22, 2025 - Python
Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
deep-learning synthetic-biology transformer attention cell-segmentation instance-segmentation system-biology bibm-2020 cell-detr
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Mar 28, 2022 - Python
[IMAVIS] Official implementation of "ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation".
deep-neural-networks yolo medical-image-computing medical-image-processing cell-segmentation nucleus-detection computer-vision-algorithms instance-segmentation deep-learning-framework cell-detection medical-image-analysis data-science-bowl-2018 medical-image-segmentation nuclei-segmentation lesion-segmentation hematoxylin-eosin-staining breast-cancer-segmentation detection-segmentation-algorithm histopathology-image-analysis breast-cancer-cell
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Nov 13, 2025 - Python
Encoder-Decoder Cell and Nuclei segmentation models
ai ml pytorch microscopy cell-segmentation digital-pathology panoptic-segmentation nuclei-segmentation tissue-segmentation cellpose timm stardist hovernet omnipose
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Nov 14, 2025 - Python
A Hybrid CNN-Transformer Architecture for Precise Medical Image Segmentation
deep-learning transformers medical medical-imaging segmentation cell-segmentation multi-organ-segmentation colab-notebook skin-lesion-segmentation hybrid-transformer
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Jun 1, 2024 - Python
StarDist plugin for napari
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Aug 24, 2024 - Python
Evolve your OpenCV Image Processing filters using Cartesian Genetic Programming
computer-vision image-processing semantic-segmentation cell-segmentation instance-segmentation cartesian-genetic-programming few-shot-learning sustainable-ai local-ai frugal-ai transparent-ai
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Sep 23, 2025 - Python
[CVPRW 2025] Official code of "IAUNet: Instance-Aware U-Net"
computer-vision transformers dataset unet microscopy semantic-segmentation cell-segmentation instance-segmentation brightfield biomedical-imaging query-based
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Aug 22, 2025 - Python
Automated identification of cell boundaries from the pathological video data
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Aug 4, 2018 - Python
A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
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Sep 11, 2021 - Python
Tissue Cancer Segmentation project using multiple segmentation networks
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Jun 15, 2022 - Python
Train torchvision's MaskRCNN model using the ConvNeXt architecture as the backbone network.
deep-learning pytorch image-segmentation cell-segmentation maskrcnn cellsegmentation torchvision convnext celltrackingchallenge cell-motility
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Nov 3, 2022 - Python
Official and maintained implementation of the dataset paper "An Instance Segmentation Dataset of Yeast Cells in Microstructures" [EMBC 2023].
deep-learning evaluation dataset medical-imaging segmentation evaluation-metrics cell-segmentation evaluation-framework instance-segmentation embc panoptic-segmentation yeast-dataset
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Feb 21, 2024 - Python
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