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cell-annotation

Here are 4 public repositories matching this topic...

ElliotXie / CASSIA

CASSIA: A multiagent llm based single cell Annottaion framework

bioinformatics rna-seq annotation multiagent-systems single-cell singlecell cell-annotation singlecellgenomics ai4science llm prompt-engineering singlecell-data-analysis retrieved-augmented-generation

Updated Oct 17, 2025
Python

xinglab-ai / genomap

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

visualization bioinformatics deep-learning genomics tabular-data single-cell biomarker-discovery classification-algorithm biomarkers bioinfomatics-pipeline genomic-data-analysis genomics-visualization regression-algorithms data-classification bioinformatics-tool trajectory-inference cell-annotation multi-omic-integration

Updated May 27, 2024
Python

CahanLab / PySingleCellNet

singleCellNet in Python

single-cell cell-type-classification cell-annotation cell-typing

Updated Sep 15, 2025
Python

jendelel / CellCounter

A small GUI application for counting cells in microscope images

computer-science cell-segmentation cell-annotation

Updated Feb 22, 2019
Python

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