User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.
Analysis pipeline for bulk RNA-seq data
An advanced computational biology project aimed at analyzing causal networks of space-induced neurodegeneration in mice using NASA's OSD-352 dataset and PC algorithm; Ultimately mapping findings to human genes for insights into neurodegenerative diseases and space health.
HULK is a fully automated, containerized pipeline for processing bulk RNA-seq data directly from SRA accessions
EXPORT: Explainable VAE for ordinally perturbed transcriptomics data
Bioinformatics data pipelines and workflows developed and implemented to support genomics studies at the Center for Brain Immunology and Glia (BIG), University of Virginia.
This workflow performs a metatranscriptomics and bulk RNAseq analysis from the sequencing output data to the differential expression analyses.
🔍 Explore multi-omics integration with DIABLO, DIVAS, and VAEs, providing clear methods for combining diverse data without implying causation.
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