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biomedical-named-entity-recognition

Here are 10 public repositories matching this topic...

BaderLab / saber

Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work in progress. Many things are broken, and the codebase is not stable.

machine-learning bioinformatics deep-learning information-extraction spacy biomedical-text-mining biomedical-named-entity-recognition

Updated Jul 14, 2020
Python

amzn / amazon-weak-ner-needle

Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data

weak-supervision ner biomedical bert weakly-supervised-learning distant-supervision biomedical-named-entity-recognition

Updated Jul 25, 2023
Python

dmis-lab / ConNER

Bioinformatics'2023: Consistency Enhancement of Model Prediction on Document-level Named Entity Recognition

consistency named-entity-recognition biomedical-named-entity-recognition consistency-models conner

Updated Jun 8, 2023
Python

Bohdan-Khomtchouk / NERO-nlp

NERO-nlp is a PyPI package for biomedical Named Entity (Recognition) Ontology

nlp natural-language-processing nlp-library nlp-datasets biomedical-named-entity-recognition

Updated Oct 1, 2020
Python

asyml / ForteHealth

The project is in the incubation stage and still under development. ForteHealth is a flexible and powerful ML workflow builder for biomedical and clinical scenarios. This is part of the CASL project: http://casl-project.ai/

python machine-learning natural-language-processing information-retrieval deep-learning natural-language data-processing biomedical-named-entity-recognition clinical-text-processing clinical-nlp

Updated Mar 22, 2023
Python

WengLab-InformaticsResearch / UMLS-EDA

A light-weighted UMLS-based data augmentation for biomedical NLP tasks including Named Entity Recognition and sentence classification.

natural-language-processing named umls data-augmentation biomedical-named-entity-recognition

Updated Apr 6, 2021
Python

kuldeep7688 / BioMedicalBertNer

Named Entity Recognition using BERT

machine-learning natural-language-processing bioinformatics deeplearning ner bert biomedical-data-science biomedical-text-mining jnlpba biomedical-named-entity-recognition

Updated Nov 15, 2021
Python

fgh95 / DrugLinker

Simple exact-matching algorithm to standardise drug names appearing on the DrugBank open-access repository

text-mining bioinformatics entity-linking chemical-entities named-entity-linking named-entity-disambiguation biomedical-named-entity-recognition

Updated May 12, 2021
Python

albert-espin / drug-interactions

Extraction of Drug-Drug Interactions from Biomedical Texts

nlp machine-learning natural-language-processing ai deep-learning neural-network ddi crf cnn recurrent-neural-networks artificial-intelligence named-entity-recognition neural-networks drug-discovery convolutional-neural-networks biomedical conditional-random-fields natural-language-understanding biomedical-named-entity-recognition drug-drug-interaction

Updated Feb 5, 2020

phil1995 / BioNER

BioNER: Named Entity Recognition in the Biomedical Domain

pytorch named-entity-recognition biomedical-named-entity-recognition

Updated Dec 7, 2021
Python

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