Code for design of diagnostic PCR primers, and metabarcoding markers.
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Nov 7, 2023 - Python
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bioinformatics-scripts
Here are 69 public repositories matching this topic...
Natural Language Search and Analysis of High Dimensional Genomic Data
bioinformatics genomics bioinformatics-pipeline bioinformatics-analysis bioinformatics-scripts bioinformatics-databases bioinformatics-algorithms genomics-search
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May 19, 2025 - Python
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
python lists list bioinformatics genomics dna rna protein-sequences bioinformatics-analysis bioinformatics-scripts
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Apr 4, 2025 - Python
Explore biomolecular pathways in Reactome from the command-line or a Python script
bioinformatics bioinformatics-pipeline pathway-analysis reactome molecular-biology bioinformatics-analysis protein-protein-interaction bioinformatics-scripts biotechnology biological-networks biotech pathway-models bioinformatics-tool reactome-pathway pathway-enrichment-analysis
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Oct 12, 2024 - Python
A Python script to map PDB ID + chain ID to UniProt ID.
bioinformatics mapping uniprot uniprot-ids bioinformatics-scripts uniprotkb pdb-files pdb-database bioinformatics-tool rcsb pdb-structure
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Mar 7, 2024 - Python
Split multi fasta file into single fasta files
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Feb 24, 2020 - Python
A collection of useful bioinformatics scripts.
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Dec 13, 2016 - Python
Filter for reads from taxa of interest using Kraken2/Centrifuge classification results.
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Dec 26, 2022 - Python
Find motifs enriched around prominent crosslinks
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Apr 29, 2024 - Python
Простые биоинформатические скрипты на Python 3. Удобная и гибкая замена Excel/Calc для решения повседневных рутинных задач вычислительной биологии.
opensource bioinformatics python3 bioinformatics-pipeline bioinformatics-scripts bioinformatics-algorithms vigg bioinformatic-tools
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Jan 12, 2020 - Python
bioinformatic utility libraries in python
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Dec 18, 2022 - Python
Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
bioinformatics rna-seq computational-biology bioinformatics-pipeline ribosome-profiling riboseq bioinformatics-scripts rrna oligonucleotide bioinformatics-tool oligo-design
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Jan 27, 2023 - Python
The official python version of ImGQfinder: http://imgqfinder.niifhm.ru/ A tool that finds gquadruplexes and imotifs.
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Jan 24, 2022 - Python
This repository will be helpful to start using python for your Bioinformatics projects.
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Apr 27, 2021 - Python
Data processing scripts for analysis of targeted metagenomics sequencing data. Intended for use with multiplexed Illumina short-read data generated after enrichment.
python bash bioinformatics enrichment pathogen metagenomics viruses bacteria probes bioinformatics-scripts sepsis pathogenomics meningitis
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Jun 11, 2024 - Python
TopONE is a project that studies recombination events using topological data analysis. This was made in the PGC-BTIP 2024 internship by Alfonso Miguel Cruz and Claire Angelie Gabisay, and mentored by C.J. Palpal-latoc.
bioinformatics topology genomics topological-data-analysis viral-genomics bioinformatics-scripts ms recombination recombination-events sars-cov-2
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Aug 29, 2024 - Python
An empirical variant annotation and data evaluation pipeline.
bioinformatics bioinformatics-pipeline data-analysis variant-annotations bioinformatics-analysis bioinformatics-scripts data-evaluation bioinformatics-tool
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Mar 1, 2022 - Python
Implementing the Smith-Waterman algorithm in Python
python bioinformatics smith-waterman dynamic-programming bioinformatics-scripts bioinformatics-tool smith-waterman-algorithm
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Jan 12, 2021 - Python
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