bioimage

Here are 3 public repositories matching this topic...

Euro-BioImaging / BatchConvert

A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.

workflow image nextflow conversion file-format ome-tiff ome zarr bioimage ome-zarr ome-zarr-converter

Updated Mar 14, 2025
Python

Euro-BioImaging / EuBI-Bridge

Star

A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.

image conversion file-format dask concatenation ome zarr ngff bioimage ome-zarr ome-zarr-converter

Updated Jan 24, 2026
Python

MohammadrezaRH / neuroimage-quantification

Star

Automated analysis of brain tissue images using Python (GFAP, SOX9, NeuN, Hoechst)

python cli bioinformatics neuroscience image-analysis image-analysis-and-processing bioimage cell-quantification

Updated Jul 25, 2025
Python

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