#

bioimage-analysis

Here are 6 public repositories matching this topic...

qupath / qupath

QuPath - Open-source bioimage analysis for research

groovy opencv machine-learning imagej javafx image-processing histology cell-segmentation bioimage-informatics digital-pathology pathology whole-slide-imaging cell-analysis computational-pathology bioimage-analysis tissue-microarray-analysis

Updated Nov 19, 2025
Java

mastodon

mastodon-sc / mastodon

Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.

java imglib2 interactive-analysis interactive-visualizations tracking-algorithm bioimage-analysis microscopy-images large-images trackmate cell-lineage

Updated Nov 11, 2025
Java

cytomine / cytomine

A web platform for collaborative analysis of very large bio-medical images

image-annotation digital-pathology whole-slide-imaging bioimage-analysis cytomine collaborative-analysis

Updated Nov 19, 2025
Java

Pablo1990 / Bioimage_hackday_FIJIPlugin

Hackday project

bioinformatics computational-biology bioimage-analysis

Updated Jun 18, 2021
Java

fpBioImage / FPBioimageHelper-Icy

bioimage-analysis fpbioimage

Updated Jan 10, 2018
Java

SciCompJ / Imago

Generic Image processing Graphical application based on CS4J

image-processing image-analysis bioimage-analysis

Updated Nov 14, 2025
Java

Improve this page

Add a description, image, and links to the bioimage-analysis topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the bioimage-analysis topic, visit your repo's landing page and select "manage topics."