Identification of transcriptional regulatory modules from PPI networks

A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor

Technical note for the InteractionSet package

DESeq2 or edgeR

Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

A R-package for meta data query of PRIDE database

A R-package for meta data query of PRIDE database

Utilities for "nuclear run on" biological experiments

Graphical GUI for Docker (Bioconductor, R, Cytoscape, NetworkBMA)

Analysis of microarray data from dHPC of rats treated with lps for 6h

Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)

RNA-Seq analysis for "Mitochondrial DNA Variation Dictates Expressivity and Progression of Nuclear DNA Mutations Causing Cardiomyopathy"

Predicting Discontinuation of Docetaxel Treatment for Metastatic Castration-Resistant Prostate Cancer (mCRPC)

MOdule Differential Analysis for weighted gene co-expression network

Portable Proteomics Pipeline

An archived version of the InteractionSet repository, see https://github.com/LTLA/InteractionSet for the active version.

An archived version of the cydar repository, see https://github.com/MarioniLab/cydar for the active version.

A scraper which tries to generate conda recipes for bioconductor and other needed R packages.

An archived version of the csaw repository, see https://github.com/LTLA/csaw for the active version.

This repo is deprecated. Use https://github.com/plantarum/flowPloidy instead!