📜 🎉 Automated reporting of objects in R

👻 Utilities for analyzing Bayesian models and posterior distributions

🔗 Methods for Correlation Analysis

bayesplot R package for plotting Bayesian models

rstanarm R package for Bayesian applied regression modeling

The Predictive Ecosystem Analyzer (PEcAn) is an integrated ecological bioinformatics toolbox.

shinystan R package and ShinyStan GUI

Code that might be useful to others for learning/demonstration purposes, specifically along the lines of modeling and various algorithms. **Superseded by the models-by-example repo**.

The posterior R package

loo R package for approximate leave-one-out cross-validation (LOO-CV) and Pareto smoothed importance sampling (PSIS)

CmdStanR: the R interface to CmdStan

An R package for experimental psychologists

Projection predictive variable selection

Mixed-effect model to test differences in cell type proportions from single-cell data, in R

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version

Bayesian spatial analysis

By-hand code for models and algorithms. An update to the 'Miscellaneous-R-Code' repo.

A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

priorsense: an R package for prior diagnostics and sensitivity