Learning the Sequence Alignment/Map format

Tools for querying and analysis of genomic data

Simple scripts for handling Unique Molecular Indexes in Fastq and Bam files

Visualize your BAM alignments with Circos

A script to report depth of coverage from BAM/SAM/CRAM file or parse the output generated from "samtools depth"

Udo Stenzel's perl-ngs — a collection of Perl tools for next-generation sequencing [MIRROR]