Amplicon sequencing analysis workflow using DADA2 and QIIME2
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
Tools for visualising microbial community amplicon data
In-silico PCR, primer design and padlock design for in-situ sequencing
Various functions for analysis of microbial community data
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
microhaplotype visualizer and analyzer
Metagenomics calibration R package
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing
gNOMO2 allows integrated multi-omics analyses of microbiomes
The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package
A web app for environmental DNA metabarcoding analysis
Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.
Python package for microsatellite genotyping from highly multiplexed amplicon sequencing data
SCRAPT: An Iterative Algorithm for Clustering Large 16S rRNA Gene Datasets
Add a description, image, and links to the amplicon-sequencing topic page so that developers can more easily learn about it.
To associate your repository with the amplicon-sequencing topic, visit your repo's landing page and select "manage topics."