🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
Source code of the Bgee pipeline used to build the Bgee database
A collection of miscellaneous bioinformatics scripts
R scripts & functions for SNP data analysis of genotyping data from Affymetrix Axiom arrays
Various python programs I use for the manipulation of SNP genotype datasets and other bioinformatics tasks. This repository features miscellaneous scripts to help work efficiently in common bioinformatics tasks I encounter. Use at own risk
Affymetrix OncoScan / OncoScan_CNV processing using apt-copynumber-onco-ssa (2.4.0)
Smarter database repository
Gene expression experiments using Python and R
A pipeline for determining the genomic location and transformation rules for the variants described in Illumina or Affymetrix genotype panel manifest files.
Analysis of gene expression in umbilical cord blood from ASD, Non-TD, and TD subjects in the MARBLES and EARLI studies
Affymetrix CytoScan (750k / HD) processing using apt-copynumber-cyto-ssa (2.4.0)
App to illustrate the history of transcript cluster annotations of the Affy array HTA2.0
Creates a GCT file from a set of CEL files from Affymetrix ST arrays.
Find shared SNPs between different microarray chips
Microarray Analysis of Differential Expression
Affymetrix GenomeWideSNP_6 processing using apt-copynumber-workflow (1.20.0)
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