Sinto is a toolkit for processing aligned single-cell data. Sinto includes functions to:
- Subset reads from a BAM file by cell barcode
- Create a scATAC-seq fragments file from a BAM file
- Add read tags to a BAM file according to cell barcode information
- Add read groups based on read tags
- Copy or move read tags to another read tag
- Copy cell barcodes to/from read names or read tags
- Add cell barcodes to FASTQ read names
Read the documentation at https://timoast.github.io/sinto