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Gene trend plotting with pygam with scipy>1.14.0

bugSomething isn't workingSomething isn't working

Status: Open.

#1241 In theislab/cellrank;

· WeilerP opened on Dec 19, 2024

Why not take scipy implementation of Pearson correlation for computing lineage drivers?

questionFurther information is requestedFurther information is requested

Status: Open.

#1231 In theislab/cellrank;

· VladimirShitov opened on Oct 22, 2024

Compute and plot gene module scores over pseudotime

enhancementNew feature or requestNew feature or request

Status: Open.

#1202 In theislab/cellrank;

· sohrabsa opened on Jun 13, 2024

Question about Transition Matrix and Initial States

questionFurther information is requestedFurther information is requested

Status: Open.

#1198 In theislab/cellrank;

· jennylsmith opened on May 10, 2024

Extract gene expression on pseudotime from cellrank.pl.gene_trends

questionFurther information is requestedFurther information is requested

Status: Open.

#1197 In theislab/cellrank;

· TinyTasy opened on May 2, 2024

A question about ‘g_fwd.compute_fate_probabilities(preconditioner='ilu', tol=1e-7, solver='direct')’

questionFurther information is requestedFurther information is requested

Status: Open.

#1194 In theislab/cellrank;

· liuyang218622 opened on Apr 26, 2024

ValueError: Transition matrix is not row stochastic, 8216 rows do not sum to 1.

bugSomething isn't workingSomething isn't working

Status: Open.

#1192 In theislab/cellrank;

· simonekats opened on Apr 25, 2024

gene expression trends line plots grouped by sample conditions

questionFurther information is requestedFurther information is requested

Status: Open.

#1191 In theislab/cellrank;

· qinting opened on Apr 22, 2024

In cases the same cluster is estimated as initial and terminal states

questionFurther information is requestedFurther information is requested

Status: Open.

#1189 In theislab/cellrank;

· st-tky opened on Apr 11, 2024

Proper use of the "Lineages" Parameter for Lineage Drivers

questionFurther information is requestedFurther information is requested

Status: Open.

#1182 In theislab/cellrank;

· jwalewski opened on Mar 28, 2024

Update type hinting

Status: Open.

#1178 In theislab/cellrank;

· WeilerP opened on Mar 20, 2024

Test CI fail with pytest==8.1.0

Status: Open.

#1173 In theislab/cellrank;

· WeilerP opened on Mar 4, 2024