diff --git a/src/Rbin/R/Rbin.R b/src/Rbin/R/Rbin.R index 92876f0..ff3bcf6 100644 --- a/src/Rbin/R/Rbin.R +++ b/src/Rbin/R/Rbin.R @@ -609,7 +609,7 @@ return(data.frame(index, data, ref_med_cov, matched_med_cov, mismatched_med_cov) batch_get_references_to_rbin <- function(index_file, gender_file, rbin_dir, cor_dir, bin_dir, batch_size = 1000, target_files_size, start_pos, cor_cut = 0.9, skip_em=FALSE) { gens = read.table(gender_file, header=T) - sample_names =as.character(gens[start_pos:(start_pos-target_files_size)-1,1]) + sample_names =as.character(gens[start_pos:((start_pos-target_files_size)-1),1]) for(x in 1:length(sample_names)) { sample_name = sample_names[x] data = get_references_return(sample_name, index_file, gender_file, cor_dir, bin_dir, batch_size, cor_cut, skip_em)