Update SUMMARY.md

Author: gitbook-bot

SUMMARY.md

@@ -1,72 +1,72 @@
 # Summary
 
 * [Introduction](README.md)
-    * [Data Sources](data-sources.md)
-    * [Software](software.md)
+   * [Data Sources](data-sources.md)
+   * [Software](software.md)
 * [Scientific Objectives and Experimental Design](user/scientific-objectives-and-experimental-design.md)
-    * [Protocols](user/protocols.md)
-        * [Field Scanner Protocol](user/protocols-field-scanner.md)
-        * [Genomics Protocol](user/protocol_for_genomics.md)
-        * [Manual Field Data Protocols](user/protocols-manual.md)
-        * [Phenotractor Protocols](user/protocols-tractor.md)
-        * [Template Protocol](user/protocol_template.md)
-        * [UAV Protocols](user/protocols-UAV.md)
-    * [Experimental Design](user/experimental-design.md)
-        * [Experimental Design MAC](user/experimental-design-mac.md)
-        * [Experimental Design Danforth](user/experimental-design-danforth.md)
-    * [Sorghum Lines](user/sorghum_lines.md)
+   * [Protocols](user/protocols.md)
+       * [Field Scanner Protocol](user/protocols-field-scanner.md)
+       * [Genomics Protocol](user/protocol_for_genomics.md)
+       * [Manual Field Data Protocols](user/protocols-manual.md)
+       * [Phenotractor Protocols](user/protocols-tractor.md)
+       * [Template Protocol](user/protocol_template.md)
+       * [UAV Protocols](user/protocols-UAV.md)
+   * [Experimental Design](user/experimental-design.md)
+       * [Sorghum Lines](user/sorghum_lines.md)
+       * [Experimental Design MAC](user/experimental-design-mac.md)
+       * [Experimental Design Danforth](user/experimental-design-danforth.md)
 * [User Manual](user/user-manual.md)
-    * [What Data is Available](user/what-data-is-available.md)
-    * [Data Products](user/data-products.md)
-        * [Environmental conditions](user/environmental-conditions.md)
-        * [Fluorescence intensity imaging](user/products/fluorescence-intensity-imaging.md)
-        * [Genomics data](user/genomics-data.md)
-        * [Geospatial information](user/geospatial-information.md)
-        * [Hyperspectral imaging data](user/hyperspectral-imaging-data.md)
-        * [Infrared heat imaging data](user/infrared-heat-imaging-data.md)
-        * [Multispectral imaging data](user/multispectral-imaging-data.md)
-        * [Point Cloud Data](products/point-cloud-data.md)
-        * [Stereo imaging data](user/stereo-imaging-data.md)
-        * [Trait data](user/trait-data.md)
-    * [How to Access Data](user/how-to-access-data.md)
-        * [Using Clowder](user/using-clowder.md)
-        * [Using Globus](user/using-globus.md)
-        * [Using BETYdb](user/using-betydb.md)
-        * [Using CoGe](user/using-coge.md)
-    * [Data Formatting](user/data-formatting.md)
-    * [Data Use Policy](user/data_release_policy.md)
-    * [Manuscripts and Authorship Guidelines](manuscripts-and-authorship.md)
-    * [Release \/ reprocessing schedule](user/release_schedule.md)
+   * [What Data is Available](user/what-data-is-available.md)
+   * [Data Products](user/data-products.md)
+       * [Environmental conditions](user/environmental-conditions.md)
+       * [Fluorescence intensity imaging](user/products/fluorescence-intensity-imaging.md)
+       * [Genomics data](user/genomics-data.md)
+       * [Geospatial information](user/geospatial-information.md)
+       * [Hyperspectral imaging data](user/hyperspectral-imaging-data.md)
+       * [Infrared heat imaging data](user/infrared-heat-imaging-data.md)
+       * [Multispectral imaging data](user/multispectral-imaging-data.md)
+       * [Point Cloud Data](products/point-cloud-data.md)
+       * [Stereo imaging data](user/stereo-imaging-data.md)
+       * [Trait data](user/trait-data.md)
+   * [How to Access Data](user/how-to-access-data.md)
+       * [Using Clowder](user/using-clowder.md)
+       * [Using Globus](user/using-globus.md)
+       * [Using BETYdb](user/using-betydb.md)
+       * [Using CoGe](user/using-coge.md)
+   * [Data Formatting](user/data-formatting.md)
+   * [Data Use Policy](user/data_release_policy.md)
+   * [Manuscripts and Authorship Guidelines](manuscripts-and-authorship.md)
+   * [Release \/ reprocessing schedule](user/release_schedule.md)
 * [Architecture Documentation](architecture-documentation.md)
-    * [Data Standards](data-standards.md)
-        * [Agronomic and Phenotype Data Standards](agronomic-and-phenotype-data-standards.md)
-        * [Environmental Data Standards](environmental-data.md)
-        * [Genomic Data Standards](genomic-data-standards.md)
-        * [Sensor Data Standards](sensor-data-standards.md)
-        * [Data Standards Committee](data-standards-committee.md)
-    * [Directory Structure](directory-structure.md)
-    * [Quality Assurance and Quality Control](qaqc.md)
+   * [Data Standards](data-standards.md)
+       * [Agronomic and Phenotype Data Standards](agronomic-and-phenotype-data-standards.md)
+       * [Environmental Data Standards](environmental-data.md)
+       * [Genomic Data Standards](genomic-data-standards.md)
+       * [Sensor Data Standards](sensor-data-standards.md)
+       * [Data Standards Committee](data-standards-committee.md)
+   * [Directory Structure](directory-structure.md)
+   * [Quality Assurance and Quality Control](qaqc.md)
 * [Technical Documentation](technical-documentation.md)
-    * [Data Storage](data-storage.md)
-    * [Data Backup](data-backup.md)
-    * [Data Transfer](data-transfer.md)
-    * [Data Processing Pipeline](data-processing-pipeline.md)
-    * [Data Collection](data-collection.md)
-    * [Data Product Creation](data-product-creation.md)
-        * [Downwelling Spectral Radiances Data](downwelling-spectral-radiances-data.md)
-        * [Genomic Data](genomic-data-product.md)
-        * [Hyperspectral Data](hyperspectral-data.md)
-    * [Sensor Calibration](sensor-calibration.md)
+   * [Data Storage](data-storage.md)
+   * [Data Backup](data-backup.md)
+   * [Data Transfer](data-transfer.md)
+   * [Data Processing Pipeline](data-processing-pipeline.md)
+   * [Data Collection](data-collection.md)
+   * [Data Product Creation](data-product-creation.md)
+       * [Downwelling Spectral Radiances Data](downwelling-spectral-radiances-data.md)
+       * [Genomic Data](genomic-data-product.md)
+       * [Hyperspectral Data](hyperspectral-data.md)
+   * [Sensor Calibration](sensor-calibration.md)
 * [Developer Manual](developer-manual.md)
-    * [Submitting data to Clowder](submitting-data-to-clowder.md)
-    * [Submitting data to BETYdb](submitting-data-to-betydb.md)
-    * [Submitting Data to CoGe](submitting-data-to-coge.md)
-    * [Developing Clowder Extractors](developing-clowder-extractors.md)
+   * [Submitting data to Clowder](submitting-data-to-clowder.md)
+   * [Submitting data to BETYdb](submitting-data-to-betydb.md)
+   * [Submitting Data to CoGe](submitting-data-to-coge.md)
+   * [Developing Clowder Extractors](developing-clowder-extractors.md)
 * [Tutorials](tutorials.md)
-    * [Using Sensor Metadata](tutorials/accessing_sensor_information.md)
-    * [Using Phenotype Data](tutorials/phenotype_analysis.md)
+   * [Using Sensor Metadata](tutorials/accessing_sensor_information.md)
+   * [Using Phenotype Data](tutorials/phenotype_analysis.md)
 * [Appendix](appendix.md)
-    * [Code of Conduct](code_of_conduct.md)
-    * [Collaboration Tools](collaboration_tools.md)
-    * [Glossary](glossary.md)
+   * [Code of Conduct](code_of_conduct.md)
+   * [Collaboration Tools](collaboration_tools.md)
+   * [Glossary](glossary.md)