Dockerfile

#  Copyright 2018 Synthego Corporation All Rights Reserved
#
#  The Synthego ICE software was developed at Synthego Corporation.
#
#  Permission to use, copy, modify and distribute any part of Synthego ICE for
#  educational, research and non-profit purposes, without fee, and without a
#  written agreement is hereby granted, provided that the above copyright notice,
#  this paragraph and the following paragraphs appear in all copies.
#
#  Those desiring to incorporate this Synthego ICE software into commercial
#  products or use for commercial purposes should contact Synthego support at Ph:
#  (888) 611-6883 ext:1, E-MAIL: support@synthego.com.
#
#  In no event shall Synthego Corporation be liable to any party for direct,
#  indirect, special, incidental, or consequential damages, including lost
#  profits, arising out of the use of Synthego ICE, even if Synthego Corporation
#  has been advised of the possibility of such damage.
#
#  The Synthego ICE tool provided herein is on an "as is" basis, and the Synthego
#  Corporation has no obligation to provide maintenance, support, updates,
#  enhancements, or modifications. The Synthego Corporation makes no
#  representations and extends no warranties of any kind, either implied or
#  express, including, but not limited to, the implied warranties of
#  merchantability or fitness for a particular purpose, or that the use of
#  Synthego ICE will not infringe any patent, trademark or other rights.

#  Synthego ICE

FROM continuumio/miniconda3

MAINTAINER support@synthego.com

RUN echo 'Building SYNTHEGO ICE docker environment'
RUN echo 'For more information, visit https://github.com/synthego-open/ice'

ENV PYTHONPATH $PYTHONPATH:/ice

# Install python dependencies

RUN conda install -y -c numpy scipy pandas matplotlib biopython

ADD . /ice

# clear any local pyc files (can interfere with tests)
RUN find /ice -name \*.pyc -delete

RUN pip install -r /ice/requirements.txt