carsus-data-repos-config.yml

name: carsus-data-repos-config

on: 
  workflow_dispatch: 
        
env:
  NBCONVERT_FLAGS: --execute --ExecutePreprocessor.timeout=600 --to html

defaults:
      run:
        shell: bash -l {0}

jobs:
  checkout:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
        with:
          path: carsus/

      - name: Restore cache
        uses: actions/cache@v3
        with:
          path: carsus-data-cmfgen
          key: ${{ runner.os }}-cache-${{ hashFiles('carsus-data-cmfgen/**/*.lock') }}

      - name: Restore cache
        uses: actions/cache@v3
        with:
          path: carsus-data-kurucz
          key: ${{ runner.os }}-cache-${{ hashFiles('carsus-data-kurucz/**/*.lock') }}

      - name: Restore cache
        uses: actions/cache@v3
        with:
          path: carsus-data-nist
          key: ${{ runner.os }}-cache-${{ hashFiles('carsus-data-nist/**/*.lock') }}
        
      - run: |
          for repo in carsus-data-cmfgen carsus-data-kurucz carsus-data-nist; do
            repo_path="$repo"
       
            if [ ! -d $repo_path ] ; then
              git clone https://github.com/tardis-sn/$repo $repo_path     
            else                               
              cd $repo_path
              git fetch
              git checkout origin/main
              cd ..
            fi
          done

      - uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: conda-lock.yml
          init-shell: bash
          cache-environment: true
          cache-downloads: true 
          environment-name: carsus

      - name: Install package
        run: pip install -e carsus/
          
      - name: Run notebooks
        run: |
          jupyter nbconvert ${{ env.NBCONVERT_FLAGS }} carsus/docs/tardis_atomdata_ref.ipynb
        env:
          CARSUS_REFDATA: ${{ github.workspace }}/carsus-refdata
        
      - name: Upload Atom Data
        uses: actions/upload-artifact@v3
        with:
          name: atom-data
          path: carsus/docs/kurucz_cd23_cmfgen_H_Si.h5