Manipulating WGBS data, using the pat and beta formats.
usage:
wgbstools COMMAND OPTIONS
Usage: wgbstools COMMAND [OPTIONS]
Optional commands:
- vis
- view
- cview
- convert
- beta_to_blocks
- beta_to_table
- beta2bed
- beta2bw
- beta_cov
- beta_to_450k
- init_genome
- set_default_ref
- bam2pat
- index
- pat2beta
- bed2beta
- mix_pat
- merge
- segment
- compare_betas
- homog
- find_markers
- bam_cpg_counts
- frag_len