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@suinleelab

Lee Lab @ UW Allen School

Explainable AI for Biology and Precision Medicine

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  1. path_explain path_explain Public

    A repository for explaining feature attributions and feature interactions in deep neural networks.

    Jupyter Notebook 185 28

  2. treeexplainer-study treeexplainer-study Public

    Code and documentation for experiments in the TreeExplainer paper

    HTML 179 44

  3. attributionpriors attributionpriors Public

    Tools for training explainable models using attribution priors.

    Jupyter Notebook 121 9

  4. MONET MONET Public

    Transparent medical image AI via an image–text foundation model grounded in medical literature

    Python 50 4

  5. contrastiveVI contrastiveVI Public

    Python 48 1

  6. cxr_covid cxr_covid Public

    Code for paper "AI for radiographic COVID-19 detection selects shortcuts over signal"

    Jupyter Notebook 29 7

Repositories

Showing 10 of 36 repositories
  • CFS Public

    Implementation of contrastive feature selection

    suinleelab/CFS’s past year of commit activity
    Python 1 0 0 0 Updated Jul 30, 2024
  • suinleelab/vit-shapley’s past year of commit activity
    Python 27 6 8 1 Updated Jul 19, 2024
  • MONET Public

    Transparent medical image AI via an image–text foundation model grounded in medical literature

    suinleelab/MONET’s past year of commit activity
    Python 50 4 6 0 Updated May 28, 2024
  • methylVI Public

    A deep generative model for single-cell methylation data

    suinleelab/methylVI’s past year of commit activity
    Python 4 2 0 0 Updated Apr 22, 2024
  • suinleelab/contrastiveVI’s past year of commit activity
    Python 48 BSD-3-Clause 1 5 0 Updated Apr 5, 2024
  • deepprofile-study Public

    Code for paper "A deep profile of gene expression across 18 human cancers"

    suinleelab/deepprofile-study’s past year of commit activity
    Jupyter Notebook 5 MIT 1 1 0 Updated Mar 15, 2024
  • deepprofile-data Public

    Data for "A deep profile of gene expression across 18 human cancers"

    suinleelab/deepprofile-data’s past year of commit activity
    0 MIT 0 0 0 Updated Mar 15, 2024
  • suinleelab/removal-robustness’s past year of commit activity
    0 0 0 0 Updated Oct 27, 2023
  • suinleelab/StrastiveVI’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 0 Updated Oct 16, 2023
  • DIME Public

    Code for the paper "Estimating Conditional Mutual Information for Dynamic Feature Selection"

    suinleelab/DIME’s past year of commit activity
    Python 4 1 1 0 Updated Sep 29, 2023

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