extracting all conserved sequences from multiple timeseres

[Mschaid]

I am looking for methods for extracting all conserved sequences from multiple timer series. As an example, if I have 10 timeseries, and each timeseries has 5 conserved motifs, is there a way to extract all 50 motifs instead of just the 5 conserved sequences? Has any one implemented this? Or put another way, is there a way to get all of the arrays from the clusters produces by the ostinato algorithm?

Thanks,

[seanlaw]

@Mschaid Off the top of my head, the only way to accomplish this would be to:

1. Run ostinato once on the set of time series
2. Remove/delete the consensus motif from each time series (currently, there is a bug where you cannot simply set those areas within each time series to np.nan) and then run ostinato again on the modified time series

One challenge of doing it this way is needing to manage indices with changing time series. Until the aforementioned bug gets fixed, I believe that this might be your only option