Merge pull request #83 from stocnet/develop

v1.0.5

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: manynet
 Title: Many Ways to Make, Modify, Map, Mark, and Measure Myriad Networks
-Version: 1.0.4
-Date: 2024-07-25
+Version: 1.0.5
+Date: 2024-08-29
 Description: Many tools for making, modifying, mapping, marking, measuring, 
    and motifs and memberships of many different types of networks.
    All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects,

NAMESPACE

@@ -315,6 +315,7 @@ export(cluster_concor)
 export(cluster_hierarchical)
 export(create_components)
 export(create_core)
+export(create_degree)
 export(create_empty)
 export(create_explicit)
 export(create_filled)
@@ -332,7 +333,10 @@ export(from_slices)
 export(from_subgraphs)
 export(from_ties)
 export(from_waves)
+export(generate_citations)
 export(generate_configuration)
+export(generate_fire)
+export(generate_islands)
 export(generate_permutation)
 export(generate_random)
 export(generate_scalefree)
@@ -667,13 +671,17 @@ export(tie_cohesion)
 export(tie_degree)
 export(tie_eigenvector)
 export(tie_is_bridge)
+export(tie_is_cyclical)
 export(tie_is_feedback)
 export(tie_is_loop)
 export(tie_is_max)
 export(tie_is_min)
 export(tie_is_multiple)
 export(tie_is_random)
 export(tie_is_reciprocated)
+export(tie_is_simmelian)
+export(tie_is_transitive)
+export(tie_is_triangular)
 export(tie_signs)
 export(tie_weights)
 export(to_acyclic)
@@ -694,6 +702,7 @@ export(to_multilevel)
 export(to_named)
 export(to_no_isolates)
 export(to_onemode)
+export(to_permuted)
 export(to_reciprocated)
 export(to_redirected)
 export(to_simplex)
@@ -827,6 +836,7 @@ importFrom(igraph,ivs_size)
 importFrom(igraph,knn)
 importFrom(igraph,largest_ivs)
 importFrom(igraph,make_ego_graph)
+importFrom(igraph,make_graph)
 importFrom(igraph,make_lattice)
 importFrom(igraph,make_line_graph)
 importFrom(igraph,make_star)
@@ -835,19 +845,25 @@ importFrom(igraph,max_bipartite_match)
 importFrom(igraph,mean_distance)
 importFrom(igraph,power_centrality)
 importFrom(igraph,read_graph)
+importFrom(igraph,realize_bipartite_degseq)
+importFrom(igraph,realize_degseq)
 importFrom(igraph,reciprocity)
 importFrom(igraph,reverse_edges)
 importFrom(igraph,sample_bipartite)
 importFrom(igraph,sample_degseq)
+importFrom(igraph,sample_forestfire)
 importFrom(igraph,sample_gnm)
 importFrom(igraph,sample_gnp)
+importFrom(igraph,sample_islands)
+importFrom(igraph,sample_last_cit)
 importFrom(igraph,sample_pa)
 importFrom(igraph,sample_smallworld)
 importFrom(igraph,set_edge_attr)
 importFrom(igraph,set_vertex_attr)
 importFrom(igraph,simplify)
 importFrom(igraph,transitivity)
 importFrom(igraph,triad_census)
+importFrom(igraph,triangles)
 importFrom(igraph,vcount)
 importFrom(igraph,vertex_attr)
 importFrom(igraph,vertex_attr_names)

NEWS.md

@@ -1,3 +1,43 @@
+# manynet 1.0.5
+
+## Making
+
+- Added `create_degree()` for creating networks of a given degree sequence, including _k_-regular graphs
+- Added `generate_citations()` for citation models
+- Added `generate_fire()` for forest-fire models
+- Added `generate_islands()` for island models
+- `create_explicit()` now has its own documentation
+
+## Marking
+
+- Added `tie_is_triangular()` for identifying ties in triangles
+- Added `tie_is_cyclical()` for identifying ties in cycles
+- Added `tie_is_transitive()` for identifying ties involved in transitive closure
+- Added `tie_is_simmelian()` for identifying Simmelian ties
+
+## Manipulating
+
+- `generate_permutation()` renamed to `to_permuted()`
+
+## Mapping
+
+- Updated how `graphr()` plots edges in directed networks
+- Removed automatic legends for signed networks
+- Fixed other legends issues
+
+## Data
+
+- `table_data()` can now report on data from multiple packages
+  - `{manynet}` and `{migraph}` are included by default,
+  and if any are not installed they are just ignored
+- `tabe_data()` can now filter by any reported formats,
+such as 'directed' or 'twomode'
+
+## Website
+
+- Added more structure to Modifying section
+- Added more structure to Mapping section
+
 # manynet 1.0.4
 
 ## Modifying