diff --git a/README.md b/README.md index c4c8c58..ac9b725 100644 --- a/README.md +++ b/README.md @@ -19,6 +19,12 @@ a network connection is required for most functionality. +# Usage + +The API has delivered more than 15Tb of data to the community in the first year. Thanks! + + + # Query interface ## Installation @@ -109,7 +115,7 @@ single_cell_counts = single_cell_counts #> # A SingleCellExperiment-tibble abstraction: 1,571 × 57 -#> # Features=36229 | Cells=1571 | Assays=counts +#> # [90mFeatures=36229 | Cells=1571 | Assays=counts[0m #> .cell sample_ cell_…¹ cell_…² confi…³ cell_…⁴ cell_…⁵ cell_…⁶ sampl…⁷ X_sam…⁸ #> #> 1 AGCG… 11a7dc… CD4-po… cd4 th1 3 cd4 tcm cd8 t th1 10b339… Donor_… @@ -154,7 +160,7 @@ single_cell_counts = single_cell_counts #> # A SingleCellExperiment-tibble abstraction: 1,571 × 57 -#> # Features=36229 | Cells=1571 | Assays=cpm +#> # [90mFeatures=36229 | Cells=1571 | Assays=cpm[0m #> .cell sample_ cell_…¹ cell_…² confi…³ cell_…⁴ cell_…⁵ cell_…⁶ sampl…⁷ X_sam…⁸ #> #> 1 AGCG… 11a7dc… CD4-po… cd4 th1 3 cd4 tcm cd8 t th1 10b339… Donor_… @@ -196,7 +202,7 @@ single_cell_counts = single_cell_counts #> # A SingleCellExperiment-tibble abstraction: 1,571 × 57 -#> # Features=1 | Cells=1571 | Assays=cpm +#> # [90mFeatures=1 | Cells=1571 | Assays=cpm[0m #> .cell sample_ cell_…¹ cell_…² confi…³ cell_…⁴ cell_…⁵ cell_…⁶ sampl…⁷ X_sam…⁸ #> #> 1 AGCG… 11a7dc… CD4-po… cd4 th1 3 cd4 tcm cd8 t th1 10b339… Donor_… @@ -293,17 +299,7 @@ HLA-A across all tissues #> ℹ Downloading 0 files, totalling 0 GB #> ℹ Reading files. #> ℹ Compiling Single Cell Experiment. - #> Warning: Transformation introduced infinite values in continuous y-axis - #> Warning in min(x): no non-missing arguments to min; returning Inf - #> Warning in max(x): no non-missing arguments to max; returning -Inf - -![](/stornext/Home/data/allstaff/m/milton.m/HCAquery/README_files/figure-gfm/unnamed-chunk-14-1.png) - #> Warning: Transformation introduced infinite values in continuous y-axis - #> Warning in min(x): no non-missing arguments to min; returning Inf - #> Warning in max(x): no non-missing arguments to max; returning -Inf - -![](/stornext/Home/data/allstaff/m/milton.m/HCAquery/README_files/figure-gfm/unnamed-chunk-14-2.png) ``` r library(tidySingleCellExperiment) @@ -314,8 +310,6 @@ counts |> geom_jitter(shape=".") ``` -![](/stornext/Home/data/allstaff/m/milton.m/HCAquery/README_files/figure-gfm/unnamed-chunk-15-1.png) - ![](man/figures/HLA_A_disease_plot.png) ``` r @@ -338,8 +332,6 @@ metadata |> #> ℹ Compiling Single Cell Experiment. ``` -![](/stornext/Home/data/allstaff/m/milton.m/HCAquery/README_files/figure-gfm/unnamed-chunk-17-1.png) - ![](man/figures/HLA_A_tissue_plot.png) ## Obtain Unharmonised Metadata diff --git a/man/figures/downloads.png b/man/figures/downloads.png new file mode 100644 index 0000000..0714dbc Binary files /dev/null and b/man/figures/downloads.png differ