diff --git a/README.md b/README.md
index c4c8c58..ac9b725 100644
--- a/README.md
+++ b/README.md
@@ -19,6 +19,12 @@ a network connection is required for most functionality.
+# Usage
+
+The API has delivered more than 15Tb of data to the community in the first year. Thanks!
+
+
+
# Query interface
## Installation
@@ -109,7 +115,7 @@ single_cell_counts =
single_cell_counts
#> # A SingleCellExperiment-tibble abstraction: 1,571 × 57
-#> # [90mFeatures=36229 | Cells=1571 | Assays=counts[0m
+#> # [90mFeatures=36229 | Cells=1571 | Assays=counts[0m
#> .cell sample_ cell_…¹ cell_…² confi…³ cell_…⁴ cell_…⁵ cell_…⁶ sampl…⁷ X_sam…⁸
#>
#> 1 AGCG… 11a7dc… CD4-po… cd4 th1 3 cd4 tcm cd8 t th1 10b339… Donor_…
@@ -154,7 +160,7 @@ single_cell_counts =
single_cell_counts
#> # A SingleCellExperiment-tibble abstraction: 1,571 × 57
-#> # [90mFeatures=36229 | Cells=1571 | Assays=cpm[0m
+#> # [90mFeatures=36229 | Cells=1571 | Assays=cpm[0m
#> .cell sample_ cell_…¹ cell_…² confi…³ cell_…⁴ cell_…⁵ cell_…⁶ sampl…⁷ X_sam…⁸
#>
#> 1 AGCG… 11a7dc… CD4-po… cd4 th1 3 cd4 tcm cd8 t th1 10b339… Donor_…
@@ -196,7 +202,7 @@ single_cell_counts =
single_cell_counts
#> # A SingleCellExperiment-tibble abstraction: 1,571 × 57
-#> # [90mFeatures=1 | Cells=1571 | Assays=cpm[0m
+#> # [90mFeatures=1 | Cells=1571 | Assays=cpm[0m
#> .cell sample_ cell_…¹ cell_…² confi…³ cell_…⁴ cell_…⁵ cell_…⁶ sampl…⁷ X_sam…⁸
#>
#> 1 AGCG… 11a7dc… CD4-po… cd4 th1 3 cd4 tcm cd8 t th1 10b339… Donor_…
@@ -293,17 +299,7 @@ HLA-A across all tissues
#> ℹ Downloading 0 files, totalling 0 GB
#> ℹ Reading files.
#> ℹ Compiling Single Cell Experiment.
- #> Warning: Transformation introduced infinite values in continuous y-axis
- #> Warning in min(x): no non-missing arguments to min; returning Inf
- #> Warning in max(x): no non-missing arguments to max; returning -Inf
-
-![](/stornext/Home/data/allstaff/m/milton.m/HCAquery/README_files/figure-gfm/unnamed-chunk-14-1.png)
- #> Warning: Transformation introduced infinite values in continuous y-axis
- #> Warning in min(x): no non-missing arguments to min; returning Inf
- #> Warning in max(x): no non-missing arguments to max; returning -Inf
-
-![](/stornext/Home/data/allstaff/m/milton.m/HCAquery/README_files/figure-gfm/unnamed-chunk-14-2.png)
``` r
library(tidySingleCellExperiment)
@@ -314,8 +310,6 @@ counts |>
geom_jitter(shape=".")
```
-![](/stornext/Home/data/allstaff/m/milton.m/HCAquery/README_files/figure-gfm/unnamed-chunk-15-1.png)
-
![](man/figures/HLA_A_disease_plot.png)
``` r
@@ -338,8 +332,6 @@ metadata |>
#> ℹ Compiling Single Cell Experiment.
```
-![](/stornext/Home/data/allstaff/m/milton.m/HCAquery/README_files/figure-gfm/unnamed-chunk-17-1.png)
-
![](man/figures/HLA_A_tissue_plot.png)
## Obtain Unharmonised Metadata
diff --git a/man/figures/downloads.png b/man/figures/downloads.png
new file mode 100644
index 0000000..0714dbc
Binary files /dev/null and b/man/figures/downloads.png differ