ERROR! java.io.IOException: Failed to list contents of /tmp/netdata-updater-hAcEdu4h9c

[Truongphi20]

Based on the tutorial, I tried to command with my sample and got the above error, This is my command:

ufcg profile --input WI0722303A01_sample/seq --output WI0722303A01_sample/out --set PRO --thread 10 --metadata QI0722303A01_sample/metadata_full_QI0722303A01_added.tsv

I have 7 samples, the first 6 samples' runnings are done successfully, but cause an error on the 7th, I suspect the error was caused by missing the input metadata field of the 7th sample. I only filled the filename, taxon_name, strain_name, and taxonomy filed of the 7th sample and missing the accession, and ncbi_name fields (because they are unknown information). I really need some help. Thanks.

[endixk]

Seems like the error was occurred by the concurrent change in the contents of /tmp directory.

Generating a custom temporary directory (e.g. /tmp/ufcg) and providing the path via -w option will prevent such behavior, such as:

mkdir -p /tmp/ufcg/
ufcg profile -i <input> -o <output> -w /tmp/ufcg/

Please give it a try and let me know if the issue persists.