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CCRP Soils Data Platform

This soils platform is the result of a collaboration between the Soils and the Research Methods Support teams, a pair of cross-cutting projects from the Collaborative Crop Research Program (CCRP).

https://soils.stats4sd.org/

Development

This platform is built using Laravel/PHP. The front-end is written in VueJS and the admin panel uses Backpack for Laravel.

Setup Local Environment

  1. Clone repo: git@github.com:stats4sd/ccrp-soils.git
  2. Copy .env.example as a new file and call it .env
  3. Update variables in .env file to match your local environment:
    1. Check APP_URL is correct
    2. Update DB_DATABASE (name of the local MySQL database to use), DB_USERNAME (local MySQL username) and DB_PASSWORD (local MySQL password)
    3. If you need to test the Kobo link, make sure QUEUE_CONNECTION is set to database or redis (and that you have redis setup locally). Also add your test KOBO_USERNAME and KOBO_PASSWORD
    4. If you need to test real email sending, update the MAIL_MAILER to mailgun, and copy over the Stats4SD Mailgun keys from 1 Password
  4. Create a local MySQL database with the same name used in the .env file
  5. Run the following setup commands in the root project folder:
composer install
php artisan key:generate
php artisan backpack:install
php artisan telescope:publish
npm install
npm run dev
  1. Migrate the database: php aritsan migrate:fresh --seed or copy from the staging site

Run Laravel Websockets & Queues

To run the local notifications, start up Laravel Websockets locally: php artisan websockets:serve. This runs the websockets server on localhost port 6001.

To test the job queue locally, run Horizon: php artisan horizon.

Add New Analysis Result to Data Download - Wide Format

Data download in wide format extracts data in one single sheet in excel file.
It is achieved by extracting data from database view.

There is a "base view" called "samples_merge" for most of the projects.
The CREATE VIEW SQL is stored in a manually created file database\views\samples_merged.sql.

For projects with specific data download requirement, the CREATE VIEW SQL is generated dynamically and executed when project is created or updated.

When there is a new analysis result, update the "base view" SQL in two files:

  • database\views\samples_merged.sql
  • src\App\Http\Controllers\SampleMergedController.php

Then run artisan command generatedbviews to re-generate database views.

php artisan generatedbviews

Add New Analysis Result to Data Download - Split Format

Data download in split format extracts data in multiple sheets in excel file.
Individual analysis result table is extracted as individual sheet in excel file.

When there is a new analysis result, add new Export class for new analysis result table, then add the new Export class to SoilWorkbookExport.php.