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Commits on May 22, 2019

• Update Makefile.include

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  abecasis

  authored
  fae4fca

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Commits on Mar 19, 2019

• CigarHelper - update clip from end to return an error if the clip position is past the end of the read

  mktrost

  committed
  457bf9e

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Commits on Dec 6, 2018

• Fix for centos6 builds.

  jonathonl

  authored
  836cb42

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Commits on Sep 20, 2018

• Removes -Werror from Makefile.

  jonathonl

  committed
  4443d54

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• Removes erroneous deletes in Chromosome constructor.

  jonathonl

  committed
  3a10afe

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Commits on Feb 22, 2018

• Removes redundant condition in Makefile.

  jonathonl

  committed
  198a43e

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• Adds -Wno-format-truncation to all compiler versions.

  jonathonl

  committed
  5500464

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Commits on Oct 8, 2017

• general/Makefile - update to ignore format-truncation error for gcc > 7.0 since StringBasics is specifically testing that the code works as expected when it truncates

  mktrost

  committed
  9db9c23

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Commits on Aug 9, 2017

• Removed redundant pos member of vcf record.

  

  Jonathon LeFaive

  authored and

  Jonathon LeFaive

  committed
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Commits on Jul 21, 2017

• Adds VcfRecordInfo::getInfoPair().

  jonathonl

  committed
  6ae0568

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• Removes VcfRecordInfo::getInfoString().

  jonathonl

  committed
  b820e16

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• Fixes VcfRecordInfo::getInfoString().

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  jonathonl

  committed
  68e28a0

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• Merge pull request #16 from Santy-8128/patch-1

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  jonathonl

  authored
  3042346

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• Add function getInfoString()

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  Santy-8128

  authored
  3d9489d

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• Fixes #15

  jonathonl

  authored
  2f1876e

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Commits on Jan 10, 2017

• Merge branch 'master' of github.com:statgen/libStatGen

  mktrost

  committed
  03946c2

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• FASTQ - update so it isn't an error if there is a single blank line at the end of the file (multiple blank lines will still result in an error being reported)

  mktrost

  committed
  9e96bdd

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Commits on Oct 29, 2016

• Modified warnings() to print out to stderr rather than stdout

  hyunminkang

  authored
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Commits on Jun 1, 2016

• VcfFile - add getFileName method

  mktrost

  committed
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Commits on Mar 12, 2016

• Update bam/test for testing single record file's IsEOF

  mktrost

  committed
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• SamFile::IsEOF - update for SamFiles to check SamInterface to see if the first Record has been read, but not processed - to avoid returning EOF for file with a single record before the record was p…

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  mktrost

  committed
  9c44f34

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Commits on Dec 2, 2015

• SamValidation - only validate cigar and seq are same length if seq is not '*'

  mktrost

  committed
  7b6bf8d

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Commits on Nov 9, 2015

• BAM - update validation since SM tag is no longer a required RG field

  mktrost

  committed
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Commits on Oct 16, 2015

• Add c++0x compile option to Makefile.include

  mktrost

  committed
  21ebdfc

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Commits on Oct 7, 2015

• bam, SamRecord, add filename to some error messages

  mktrost

  committed
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Commits on Sep 4, 2015

• Merge pull request #10 from pjvandehaar/master

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  pjvandehaar

  committed
  d18a9bb

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Commits on Aug 27, 2015

• README: change to Markdown syntax

  pjvandehaar

  committed
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• Readme: txt -> md

  pjvandehaar

  committed
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Commits on Aug 6, 2015

• FastQ - update validation to allow interleaved

  mktrost

  committed
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Commits on Jul 8, 2015

• SamFile - add improved support for reading streams

  mktrost

  committed
  cb80aa0

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• Version 1.0.14

  mktrost

  committed
  29239bc

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• ReferenceSequenceTest - remove phiX test since it is slow

  mktrost

  committed
  6c14f29

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• PedigreeLoader.cpp - fix bool vs int definition - github issue#9

  mktrost

  committed
  25b5257

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• Index - bam/tabix - update how the index is stored in memory to not preallocate the maximum number of bins for each reference as this could use a lot of memory if there are a lot of references

  mktrost

  committed
  1ee69f0

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Commits on Mar 12, 2015

• SamFilter - update to clear MapQ when marking as unmapped

  mktrost

  committed
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