README.md

Blog

• Shirin's playgRound exploring and playing with data in R
• From the bottom of the heap
• Sample (Ecology)

Evolution

• https://bookdown.org/bomeara/comparative-methods/
• https://github.com/simjoly/CourseComparativeMethods
• http://evomics.org/learning/
  • http://evomics.org/learning/bioinformatics/
• http://bedford.io/

Phylogenetics

• https://github.com/Don86/practical-pathogen-phylogenetics
• https://github.com/Phylogenetics-Brown-BIOL1425/phylogeneticbiology
• https://github.com/sdwfrost/exploratory-phylodynamics
• http://epicscotland.github.io/PhylodynamicDataSets/index.html
• https://github.com/emvolz-phylodynamics/ebola2014-practical

Ordination Methods

• http://ordination.okstate.edu/
• https://cran.r-project.org/package=vegan

Workshop

• https://bioinformatics.ca/workshops

Learning resource

• http://stephens999.github.io/fiveMinuteStats/
  • https://github.com/stephens999/fiveMinuteStats
• http://r-statistics.co/: statistical computing in R

Machine Learning

• https://github.com/aldro61/microbiome-summer-school-2017
• http://mlr-org.github.io/

Microbiome

• http://microbiome.github.io/microbiome/

Reproducible Science

• Reproducible Research in Ecology, Evolution, Behaviour, and Environmental Studies

Reproducible Research

• Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes
  • https://www.ncbi.nlm.nih.gov/pubmed/25574665
  • https://github.com/gerstung-lab/MDS-expression

Puzzle

• Advent of Code