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annotate5.out
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##fileformat=VCFv4.1
##FILTER=<ID=PASS,Description="All filters passed">
##contig=<ID=1,assembly=b37,length=249250621>
##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
##INFO=<ID=FLAG,Number=0,Type=Flag,Description="Test type">
##INFO=<ID=IINT,Number=1,Type=Integer,Description="Test type">
##INFO=<ID=IFLT,Number=1,Type=Float,Description="Test type">
##INFO=<ID=ISTR,Number=1,Type=String,Description="Test type">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=FINT,Number=1,Type=Integer,Description="Test type">
##FORMAT=<ID=FFLT,Number=1,Type=Float,Description="Test type">
##FORMAT=<ID=FSTR,Number=1,Type=String,Description="Test type">
##FILTER=<ID=q11,Description="Quality below 10">
##FILTER=<ID=q99,Description="Quality below 10">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B C
1 3000001 xx C T 11 PASS IINT=11;IFLT=1.1;ISTR=xxx GT:FINT:FFLT:FSTR .:11:1.1:xxx 0/0:11:1.1:x 0/0:11:1.1:x
1 3000002 id C T 99 q99 FLAG;IINT=88,99;IFLT=8.8,9.9;ISTR=888,999 GT 0|1 . .
1 3000003 id C T 99 q11 FLAG;IINT=88,99;IFLT=8.8,9.9;ISTR=888,999 GT:FINT:FFLT:FSTR 0|1:.:.:. 0/0:.:.:. 0/0:.:.:.
1 3000004 id C T 99 q11 FLAG;IINT=11;IFLT=1.1;ISTR=xxx GT:FINT:FFLT:FSTR 0|1:11:1.1:x 0/0:11:1.1:xxx 0/0:11:1.1:xxx