diff --git a/cdifftyping.sh b/cdifftyping.sh index 0eb74fa..d283778 100755 --- a/cdifftyping.sh +++ b/cdifftyping.sh @@ -133,7 +133,7 @@ mkdir -p $spcdifffbidir prefix="$spcdifffbidir/$sampleid" # prefix for indexes -# Filtering reads with serum_readfilter +Filtering reads with serum_readfilter echo -e "\n# Filtering reads with serum_readfilter..." cmd="serum_readfilter runfilter kraken -R1 ${read1} -R2 ${read2} -o $spcdifffbidir/cdifffiltered -db $serumdb" r1="$spcdifffbidir/cdifffiltered_R1.fastq"