Move the bootstrap inclusion later so the file can override more settings and also be specified in a ruleset.xml file (ref #793)

Author: gsherwood

CodeSniffer/CLI.php

@@ -793,11 +793,6 @@ public function process($values=array())
             $this->values = $values;
         }
 
-        // Include bootstrap files.
-        foreach ($values['bootstrap'] as $bootstrap) {
-            include $bootstrap;
-        }
-
         if ($values['generator'] !== '') {
             $phpcs = new PHP_CodeSniffer($values['verbosity']);
             if ($values['standard'] === null) {
@@ -874,6 +869,11 @@ public function process($values=array())
             $this->values['reports']   = $values['reports'];
         }
 
+        // Include bootstrap files.
+        foreach ($values['bootstrap'] as $bootstrap) {
+            include $bootstrap;
+        }
+
         $phpcs->processFiles($values['files'], $values['local']);
 
         if (empty($values['files']) === true) {