- Fixed bug when reading an array if the fill value in
.zarraywasnull. - Addressed bug in makevars where Rarr.so could be compiled before libblosc.a was ready. Also backported to Rarr 1.0.2. (Thanks to Michael Sumner for reporting this issue: grimbough#5)
- Response it initial package review (thanks @Kayla-Morrell)
- Provided manual page examples for use_* compression filter functions.
- Add details of how example data in inst/extdata/zarr_examples was created.
- General code tidying
- Patch compression libraries to remove R CMD check warnings about C functions that might crash R or write to something other than the R console. Working in Linux only.
- Allow reading and writing chunks with GZIP compression.
- Add compression level arguments to several compression tools.
- Allow reading and writing chunks with no compression.
- Enable LZ4 compression for writing.
- Fix bug in blosc compression that could result in larger chunks than necessary.
- Improve speed of indexing when combining chunks into the final output array.
- Fixed bug when specifying nested chunks, where the chunk couldn't be written unless the directory already existed.
- When writing chunks that overlap the array edge, even the undefined overhang region should be written to disk.
- Allow choice between column and row ordering when creating a Zarr array
- Catch bug when chunk files contain values outside the array extent.
- Add manual page issues identified by BBS
- Switch from aws.s3 to paws.storage for S3 data retrieval.
- Initial Bioconductor submission.
- Added a
NEWS.mdfile to track changes to the package.