We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Hello, I am trying to build a database for HHblits. I have the database was first clustered by mmseqs, and customed for hhsuite.
I use the command as below:
mmseqs cluster DB clu tmp mmseqs result2msa DB DB clu cluMsa --compressed 0 ln -s DB_h cluMsa_header.ffdata ln -s DB_h.index cluMsa_header.ffindex ln -s DB cluMsa_sequence.ffdata ln -s DB.index cluMsa_sequence.ffindex
and then run: cstranslate -i cluMsa -o cluMsa_cs219 -x 0.3 -c 4 -I ca3m
I got error: Reading context library for pseudocounts from internal ... Reading abstract state alphabet from internal ...
ERROR: Sequence 1 has 3446 match columns but should have 1847!
How can I solve it.
I am using: MMseqs2 Version: 14-7e284 HHsuite 3.3.0
Thanks
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Hello,
I am trying to build a database for HHblits. I have the database was first clustered by mmseqs, and customed for hhsuite.
I use the command as below:
mmseqs cluster DB clu tmp
mmseqs result2msa DB DB clu cluMsa --compressed 0
ln -s DB_h cluMsa_header.ffdata
ln -s DB_h.index cluMsa_header.ffindex
ln -s DB cluMsa_sequence.ffdata
ln -s DB.index cluMsa_sequence.ffindex
and then run:
cstranslate -i cluMsa -o cluMsa_cs219 -x 0.3 -c 4 -I ca3m
I got error:
Reading context library for pseudocounts from internal ...
Reading abstract state alphabet from internal ...
ERROR: Sequence 1 has 3446 match columns but should have 1847!
How can I solve it.
I am using:
MMseqs2 Version: 14-7e284
HHsuite 3.3.0
Thanks
The text was updated successfully, but these errors were encountered: